Package Overview

tracerutils-package

tracerutils: Utilities for EM Neuron Tracers

Synapses

check_duplicate_synapses()

Check a neuron for potential duplicate synapses

sample_connections()

Randomly sample synapses or connections of a neuron

synapses_per_neuropil()

Count the number of synapses one or more neurons make in each neuropil volume

Neurons

split_neuron_local()

Split a neuron and return 'downstream' section

tagged_nodes()

Generate URLs for specifically tagged nodes on a neuron

new_3d_plot()

Open a new 3D plot and plot a brain surface

plot_catmaid()

Quickly plot neurons from CATMAID

Antennal Lobe

find_glomeruli()

Finds the glomerulus associated with a PN

glomerular.valence

Valence information for olfactory glomeruli

Support

read_team_sheet() get_team_sheet()

Read / access a google sheet from a Google team drive

simple_catmaid_url()

Generate a CATMAID URL for a node or connector

quick_nblast()

Removed functions