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Fetch the ROI hierarchy for fish2

Source: R/neuprint.R
fish_rois.Rd

Fetch the ROI hierarchy for fish2

Usage

fish_rois(
  root = NULL,
  rval = c("edgelist", "graph"),
  cache = FALSE,
  conn = NULL,
  ...,
  dataset = fish_default_dataset()
)

Arguments

root

Character vector specifying a root ROI. The default (NULL) returns the whole hierarchy.

rval

Whether to return an edge list data.frame (default) or an igraph object.

cache

if TRUE will use memoisation to cache the result of the call for 24 hours.

conn

Optional, a neuprint_connection object. Defaults to fish_neuprint to ensure that the query targets fish2.

...

Additional arguments passed to neuprint_ROI_hierarchy.

dataset

optional, a dataset you want to query. If NULL, the default specified by your R environ file is used or, failing that the current connection, is used. See neuprint_login for details.

Value

The ROI hierarchy as either an edge list or igraph object.

See also

neuprint_ROI_hierarchy, fish_roi_meshes

Other 3d-meshes-skeletons: fish_roi_meshes(), read_fish_meshes(), read_fish_neurons()

Examples

# \donttest{
head(fish_rois())
#>      parent            roi
#> 1     fish2          Brain
#> 2     Brain           Mece
#> 3      Mece         Retina
#> 4      Mece      Forebrain
#> 5 Forebrain Olfactory_Bulb
#> 6 Forebrain  Telencephalon
# }