Fetch one or more ROI meshes for fish2

Fetch one or more ROI meshes for fish2

Usage

fish_roi_meshes(
  rois,
  units = c("nm", "raw", "microns"),
  conn = NULL,
  ...,
  dataset = fish_default_dataset()
)

Arguments

rois

Character vector of ROI names.

units

One of "nm" (default), "raw" (voxels), or "microns".

conn

Optional, a neuprint_connection object. Defaults to fish_neuprint to ensure that the query targets fish2.

...

Additional arguments passed to nlapply. This allows progress reporting and simple parallelisation.

dataset

The name of the dataset as reported in Clio (default "fish2").

Value

A shapelist3d containing one or more ROI mesh3d objects. Missing meshes are dropped with a warning.

Details

It seems that the nominal voxel dimensions of the dataset are 16 x 16 x 15 nm. ROI meshes are returned from neuprint in raw voxel space and are scaled up by this factor to give the default nm scaling.

See also

neuprint_ROI_mesh, nlapply, fish_rois

Other 3d-meshes-skeletons: fish_rois(), read_fish_meshes(), read_fish_neurons()

Examples

# \donttest{
fish_roi_meshes(c("Midbrain", "Hindbrain"), .progress = "none")
#>  shapelist3d object with 2 items:
#> [[1]] mesh3d object with 39619 vertices, 78938 triangles.
#> [[2]] mesh3d object with 38987 vertices, 77864 triangles.
# }