Fetch neuprint metadata for fish2 neurons

Fetch neuprint metadata for fish2 neurons

Usage

fish_neuprint_meta(
  ids = NULL,
  conn = NULL,
  roiInfo = FALSE,
  simplify.xyz = TRUE,
  ...,
  dataset = fish_default_dataset()
)

Arguments

ids

Body ids, a query string (see fish_ids), or NULL to return all bodies known to neuprint.

conn

Optional, a neuprint_connection object. Defaults to fish_neuprint to ensure that the query targets fish2.

roiInfo

Whether to include ROI information (default FALSE).

simplify.xyz

Whether to simplify columns containing XYZ locations to a simple "x,y,z" format (default TRUE).

...

Additional arguments passed to neuprint_get_meta.

dataset

The name of the dataset as reported in Clio (default "fish2").

Value

A data.frame with one row for each unique input id and NAs for all columns except bodyid when neuprint holds no metadata.

See also

manc_neuprint_meta

Other data-queries: fish_connection_table(), fish_ids(), fish_somapos(), register_fish_coconat()

Examples

# \donttest{
head(fish_neuprint_meta("RGC"))
#>      bodyid post pre downstream upstream synweight axonIn dendriteIn axonOut
#> 1 110847565   13 102        105       13       118     10          3     105
#> 2 111011778   14 147        158       14       172     13          1     158
#> 3 100046022   21 194        202       21       223     19          2     202
#> 4 100061403   36 168        177       36       213     34          2     177
#> 5 100063360   55 309        334       55       389     52          3     334
#> 6 100106910   12 142        148       12       160     11          1     148
#>   dendriteOut nsoma somaSide    statusLabel group  name type
#> 1           0     0     <NA> Sensory Anchor     0 RGC_R  RGC
#> 2           0     0     <NA> Sensory Anchor     0 RGC_R  RGC
#> 3           0     0     <NA> Sensory Anchor     0 RGC_R  RGC
#> 4           0     0     <NA> Sensory Anchor     0 RGC_R  RGC
#> 5           0     0     <NA> Sensory Anchor     0 RGC_R  RGC
#> 6           0     0     <NA> Sensory Anchor     0 RGC_R  RGC
#>   connectivityTypeV11 connectivityType perNodeSc proposedType keywords class
#> 1                <NA>             <NA>        NA         <NA>     <NA>  <NA>
#> 2                <NA>             <NA>        NA         <NA>     <NA>  <NA>
#> 3                <NA>             <NA>        NA         <NA>     <NA>  <NA>
#> 4                <NA>             <NA>        NA         <NA>     <NA>  <NA>
#> 5                <NA>             <NA>        NA         <NA>     <NA>  <NA>
#> 6                <NA>             <NA>        NA         <NA>     <NA>  <NA>
#>   comment somaLocation somaId somaVoxels zapbenchId
#> 1    <NA>         <NA>     NA         NA         NA
#> 2    <NA>         <NA>     NA         NA         NA
#> 3    <NA>         <NA>     NA         NA         NA
#> 4    <NA>         <NA>     NA         NA         NA
#> 5    <NA>         <NA>     NA         NA         NA
#> 6    <NA>         <NA>     NA         NA         NA
#>   closestLandmarkDistanceMicrons tosomaLocation status  voxels  soma
#> 1                             NA           <NA> Anchor 4580954 FALSE
#> 2                             NA           <NA> Anchor 4697626 FALSE
#> 3                             NA           <NA> Anchor 5945526 FALSE
#> 4                             NA           <NA> Anchor 7070914 FALSE
#> 5                             NA           <NA> Anchor 8442180 FALSE
#> 6                             NA           <NA> Anchor 6493266 FALSE
# }