Package index
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BANC - Provisional template brain object for BANC
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BANC.surf - Simplified tissue surface of BANC
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FANC.surf - Simplified tissue surface of FANC
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banc_lr_position() - Predict whether a point is on the left or right of the BANC dataset
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choose_fanc()choose_banc()with_fanc()with_banc() - Choose or (temporarily) use the FANC autosegmentation
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dr_fanc() - Print information about your FANC setup including tokens and python modules
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fanc4to3() - Convert XYZ locations between FANC4 (autoseg) and FANC3 (CATMAID)
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fanc_cave_client()banc_cave_client() - Low level access to FANC's CAVE annotation infrastructure
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fanc_cave_query()banc_cave_query() - Query FANC tables in the CAVE annotation system
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fanc_cellid_from_segid()fanc_segid_from_cellid() - Convert between FANC cell ids and root ids
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fanc_change_log() - Fetch change log information for one or more neurons
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fanc_ids() - Return a vector of FANC root ids from diverse inputs
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fanc_islatest() - Check if a FANC root id is up to date
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fanc_latestid() - Find the latest id for a FANC root id
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fanc_leaves() - Find the supervoxel identifiers of a FANC neuron
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fanc_partner_summary()fanc_partners() - Summarise the connectivity of FANC neurons
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fanc_read_l2dp()fanc_read_l2skel() - Read L2 skeleton or dotprops for FANC neurons using fafbseg-py
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fanc_rootid() - Find the root identifier of a FANC neuron
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fanc_scene() - Return a sample Neuroglancer scene URL for FANC dataset
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fanc_set_token() - Set the token to be used to authenticate to FANC autosegmentation resources
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fanc_voxdims()banc_voxdims()fanc_nm2raw()fanc_raw2nm()banc_raw2nm()banc_nm2raw() - Handle raw and nm calibrated FANC coordinates
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fanc_xyz2id() - Convert xyz locations to root or supervoxel ids
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mirror_banc() - Mirror points, neurons in BANC space
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mirror_banc_lm - Provisional mirroring registration for BANC (lanmarks+thin plate splines)
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read_fanc_meshes() - Read one or more FANC neuron meshes
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transform_fanc2manc() - Transform FANC to MANC