Use BANC data with coconat for connectivity similarity

Register the BANC dataset for use with coconatfly across dataset connectome analysis.

Usage

register_banc_coconat(showerror = TRUE)

Arguments

showerror

Logical: error-out silently or not.

Details

register_banc_coconat() registers bancr-backed functionality for use with coconatfly, natverse R package providing a consistent interface to core connectome analysis functions across datasets. This includes within and between dataset connectivity comparisons using cosine similarity.

See also

Other coconatfly: banc_meta_create_cache()

Examples

if (FALSE) { # \dontrun{
library(coconatfly)
# once per session
register_banc_coconat()

# once per session or if you think there have been updates
banc_meta_create_cache()
# use_seatable if you have access/want the bleeding edge
banc_meta_create_cache(use_seatable=TRUE)

# examples of within dataset analysis
dna02meta <- cf_meta(cf_ids(banc='/DNa02'))
cf_partner_summary(dna02meta, partners = 'out', threshold = 10)
cf_ids(banc='/type:DNa.+')

# an example of across dataset cosine similarity plot
cf_cosine_plot(cf_ids('/type:LAL0(08|09|10|42)', datasets = c("banc", "hemibrain")))
} # }