Thin-Plate Spline Registration from BANC to JRC2018F template brain

A thin-plate spline (TPS) registration object that transforms 3D points from the BANC nanometer coordinate system to the D. melanogaster template brain JRC2018F coordinate system.

Usage

data(banc_to_jrc2018f_tpsreg)

jrc2018f_to_banc_tpsreg

jrcvnc2018f_to_banc_tpsreg

banc_to_jrcvnc2018f_tpsreg

Format

An object of class tpsCoeff created using Morpho::computeTransform. It contains the following components:

Lw

Matrix of TPS coefficients

refmat

Reference matrix (source landmarks)

tarmat

Target matrix (target landmarks)

lattice

3D array representing the deformation grid

lambda

Smoothing parameter used in the TPS computation

scale

Logical indicating whether scaling was used

reflection

Logical indicating whether reflection was allowed

An object of class tpsCoeff of length 4.

An object of class tpsCoeff of length 4.

An object of class tpsCoeff of length 4.

Source

Derived from Elastix registration results using the banc_to_JRC2018F function and landmark correspondences extracted from that registration.

Details

This TPS registration was computed based on landmark correspondences derived from an Elastix registration between the BANC and JRC2018F spaces. It provides a smooth, interpolated transformation for any point in the BANC space to its corresponding location in the JRC2018F space.

See also

banc_to_JRC2018F for the function that performs transformations between BANC and JRC2018F spaces. computeTransform for details on creating tpsCoeff objects.

Examples

if (FALSE) { # \dontrun{
data(banc_to_jrc2018f_tpsreg)

# Transform BANC points to JRC2018F using the TPS registration
banc_points <- matrix(rnorm(300), ncol=3)  # Example BANC points
jrc2018f_points <- Morpho::tps3d(banc_points, banc_to_jrc2018f_tpsreg)
} # }