Skip to contents

Read BANC-FlyWireCodex annotation table

Source: R/cave-tables.R
banc_codex_annotations.Rd

Provides access to centralised cell type annotations from the BANC core team, which are the official annotations available on FlyWireCodex. These standardised annotations ensure consistency across the dataset and serve as the authoritative cell type classifications for the BANC connectome.

Usage

banc_codex_annotations(rootids = NULL, live = TRUE, ...)

Arguments

rootids

Character vector specifying one or more BANC rootids. As a convenience this argument is passed to banc_ids allowing you to pass in data.frames, BANC URLs or simple ids.

live

logical, get the most recent data or pull from the latest materialisation

...

method passed to banc_cave_query.

Value

A data.frame describing that should be similar to what you find for BANC in FlyWireCodex.

Details

This function accesses centralised cell type annotations curated by the BANC core team, in contrast to banc_cell_info which contains non-centralised annotations from the broader research community. The centralised annotations provide standardised cell type classifications that are displayed on FlyWireCodex and serve as the official reference for BANC cell types.

See also

banc_cave_tables, banc_cell_info

Examples

if (FALSE) { # \dontrun{
banc.meta <- banc_codex_annotations()
} # }