Simplified tissue and neuropil surfaces for BANC

banc.surf is unsymmetrical and not a normalised version of the mesh. It is the outline of the dataset in nanometers.banc_neuropil.surf represents the synaptic neuropil. Built from the BANC synapse cloud, but not optimised to include 100% of bona fide presynapses. banc_neuropils.surf contains the standard Ito et al., 2014 brain neuropil volumes transformed into BANC space. banc_al.surf contains the standard Bates and Schlegel et al, 2021 right antennal lobe glomeruli brain neuropil volumes transformed into BANC space. These neuropils may also be seen in neuroglancer, here.

A BANC neuroglaner scene can be directed to a google cloud storage location, where BANC-transformed standard neuropil meshes reside. The source is precomputed://gs://lee-lab_brain-and-nerve-cord-fly-connectome/volume_meshes They can be plotted in neuroglancer by adding this location, entering the Seg. pane and entering the number or name that corresponds to the correct mesh. This data frame gives the mesh name to number correspondences.

Usage

banc.surf

banc_neuropil.surf

banc_brain_neuropil.surf

banc_vnc_neuropil.surf

banc_neck_connective.surf

banc_neuropils.surf

banc_al.surf

banc_vnc_neuropils.surf

banc_vnc_tracts.surf

banc_vnc_nerves.surf

banc_hemibrain.surf

banc_volumes.df

Format

An object of class hxsurf (inherits from list) of length 4.

An object of class hxsurf (inherits from list) of length 4.

An object of class hxsurf (inherits from list) of length 4.

An object of class hxsurf (inherits from list) of length 4.

An object of class hxsurf (inherits from list) of length 4.

An object of class hxsurf (inherits from list) of length 4.

An object of class hxsurf of length 4.

An object of class hxsurf (inherits from list) of length 4.

An object of class hxsurf (inherits from list) of length 4.

An object of class hxsurf (inherits from list) of length 4.

An object of class hxsurf (inherits from list) of length 4.

An object of class data.frame with 220 rows and 2 columns.

See also

banc.surf for the available neuropil objects for BANC. These are hxsruf objects, names for subregions can be found as so: banc_neuropils.surf$RegionList

Examples

if (FALSE) { # \dontrun{
# Depends on nat
library(nat)
rgl::wire3d(banc.surf)
} # }